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LOC_001JB91.2
Version 2
LOC_001JB91.1
Previous version
LOC_001JB91.2
Latest version
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Pakistan/LOC_001JB91.2/2023-08-26
M. Ammar,
M. Salman,
M. Umair,
Q. Ali,
R. Hakim,
S. A. Haider &
Z. Jamal
National Institute of Health, Department of Virology
Sample details
Collection date
2023-08-26
Earliest release date
2026-06-23
Sampling location
Pakistan (Hogwarts, Punjab)
Isolate name
CCHF/NIHPAK-19/2023
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-06-23 13:21
superuser
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
Host
Host
human (Homo sapiens)
Submission details
Submission ID
test_NIHPAK-19
Version comment
revision
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-06-23 13:23:49 UTC
Date released
2026-06-23 13:24:01 UTC
Lineage
Segment S Lineage
IV.1
Files
Annotations
LOC_001JB91.2.embl
Alignment and QC
Total SNPs L
1443
Total inserted nucs L
23
Total deleted nucs L
3
Total unknown nucs L
342
Length L
12092 (96.9%)
Total SNPs S
200
Total inserted nucs S
1
Total unknown nucs S
34
Length S
1591 (93.1%)
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
L
G
32
A
A
35
G
T
49
C
T
61
C
C
63
G
C
64
T
T
65
C
T
66
C
G
69
A
G
71
T
G
88
A
G
93
A
T
97
G
A
109
G
G
119
A
A
124
G
T
131
A
C
136
T
Show more
S
A
50
G
G
54
A
G
67
A
T
79
C
G
99
A
G
100
A
A
109
G
A
118
G
C
142
T
C
166
T
G
169
A
T
172
C
C
178
A
T
182
C
T
199
C
C
217
T
G
229
A
A
268
C
Show more
Deletions
L
12028-12030
Insertions
L
ins_58:T, ins_11925:GT, ins_12081:TTTAATATCCAACTACTCCA
S
ins_1577:A
Amino acid substitutions
Substitutions called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
NP
NP:
R
15
K
NP:
V
83
A
NP:
D
116
E
NP:
T
124
S
NP:
G
125
N
NP:
H
195
R
NP:
D
199
E
NP:
I
246
V
NP:
V
254
I
NP:
R
270
K
NP:
S
301
G
NP:
A
307
V
NP:
Q
405
L
NP:
V
436
I
RdRp
RdRp:
S
6
N
RdRp:
G
15
S
RdRp:
S
19
T
RdRp:
Y
60
N
RdRp:
R
63
H
RdRp:
S
67
V
RdRp:
R
80
K
RdRp:
V
82
I
RdRp:
T
163
A
RdRp:
M
172
V
RdRp:
S
205
P
RdRp:
K
275
R
RdRp:
I
279
V
RdRp:
S
498
G
RdRp:
I
505
T
RdRp:
A
508
V
RdRp:
K
522
R
RdRp:
T
720
S
Show more
Deletions
N/A
Insertions
N/A
Nucleotide sequences
Aligned nucleotide sequences
Aligned amino acid sequences
L
M
S
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